Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEV-SVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPYT--DALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
2H2D Chain:A ((19-227))
-----LTGAGISTPSGIPDF--------------NVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDV----PLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLK---------------------
General information:
TITO was launched using:
RESULT:
Template:
2H2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87279 for 1568 contacts (-55.7/contact) +
2D Compatibility (PS) -21219 + (NN) -7345 + (LL) 3216
1D Compatibility (HY) -20000 + (ID) 3750
Total energy: -136377.0 ( -86.98 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_2H2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H2D-query.scw
PDB file :
Tito_Scwrl_2H2D.pdb
: