Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMEEMALAQQVPNLGLARFSVQDKSILITGATGSLGRVAARALADAGARLTLAGGNSAGLAELVNGA-GIDDAAVVTCRPDSLADAQQMVEAALGRYGRLDGVLVASGSNHVAPITEMAVEDFDAVMDANVRGAWLVCRAAGRVLLEQGQGGSVVLVSSVRGGLGNAAGYSAYCPSKAGTDLLAKTLAAEWGGHGIRVNALAPTVFRSAVTEWMFTDDPKGRATREAMLARIPLRRFAEPEDFVGALIYLLSDASSFYTGQVMYLDGGYTAC
1CYD Chain:C ((11-243))-------------------------LVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCV------DLGD-WDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV-TFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKE----RHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLA-


General information:
TITO was launched using:
RESULT:

Template: 1CYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		3D Compatibility (PKB) -174624 for 1948 contacts (-89.6/contact) +
2D Compatibility (PS) -24921 + (NN) -6625 + (LL) 3188
1D Compatibility (HY) -14800 + (ID) 3850
Total energy: -221632.0 ( -113.77 by residue)
QMean score : 0.514

(partial model without unconserved sides chains):
PDB file : Tito_1CYD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1CYD-query.scw
PDB file : Tito_Scwrl_1CYD.pdb: