Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLDLFDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-GGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTEYQPL---WEPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGYTCP
2WDZ Chain:C ((1-252))
MDYRTVFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAP----VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALFLASPAASYVTGAILAVDGGYT--
General information:
TITO was launched using:
RESULT:
Template:
2WDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151478 for 2172 contacts (-69.7/contact) +
2D Compatibility (PS) -27087 + (NN) -10992 + (LL) -28
1D Compatibility (HY) -13200 + (ID) 4700
Total energy: -207485.0 ( -95.53 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_2WDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WDZ-query.scw
PDB file :
Tito_Scwrl_2WDZ.pdb
: