Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAV-RVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHL-AADLLVALDRNHARLLRQL-GVE-AARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
1D1Q Chain:A ((5-160))
-KPKISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDPWYGDIQDFEYNFKQITYFSKQFLKKE----------
General information:
TITO was launched using:
RESULT:
Template:
1D1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107076 for 1261 contacts (-84.9/contact) +
2D Compatibility (PS) -16426 + (NN) -7614 + (LL) 336
1D Compatibility (HY) -10800 + (ID) 2300
Total energy: -143880.0 ( -114.10 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1D1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D1Q-query.scw
PDB file :
Tito_Scwrl_1D1Q.pdb
: