Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSVAPKEIAGHGLLDGKVVVVTAAAGTGIGSATARRALAEGADVVISDHHERRLGETAAELSALGLGRVEHVVCDVTSTAQVDALIDSTTARMGRLDVLVNNAGLGGQTPVADMTDDEWDRVLDVSLTSVFRATRAALRYFRDAPHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAAEYGVRINAVSPSIAR---HKFLDKTASAELLDRLAAGEAFGRAAEPWEVAATIAFLASDYSSYLTGEVISVSCQHP
4WJZ Chain:D ((10-245))
---------------LEGKVALVTGAS-RGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKG----MALNVTNPESIEAVLKAITDEFGGVDILVNNA-----------------DIMETNLTSIFRLSKAVLRGMMKKRQ-GRIINVASVV--------ANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTK--NDEQRTATLAQVPA----GRLGDPREIASAVAFLASPEAAYITGETLHVN----
General information:
TITO was launched using:
RESULT:
Template:
4WJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129373 for 1704 contacts (-75.9/contact) +
2D Compatibility (PS) -22649 + (NN) -5230 + (LL) 2284
1D Compatibility (HY) -12400 + (ID) 3950
Total energy: -171318.0 ( -100.54 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4WJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WJZ-query.scw
PDB file :
Tito_Scwrl_4WJZ.pdb
: