Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRVAPRDSAAQAASAVAESVRYQGRKASRQGSEQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDTFALFVERNAEALSAFWSSVEGDLQEMAAVLADDPGARGSLVERIVELAVQYVQVQLTERREHLLAEQAFRQEALLNPRLRELADAHQRILSLGAVHFFQVL----G---SGQPEQDAKVLTSIILQMEYQGLVDGVEQLAVDEMRAILRRYLNLVMGL
1RKT Chain:A ((8-200))
------------------------------EHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEH-------------------QSVWASISSYLDELTEGLRDVADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATIAKFFLNMNDGIIQNALYFDEEKADVSGLAESAKLYLKTVL--
General information:
TITO was launched using:
RESULT:
Template:
1RKT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95426 for 1273 contacts (-75.0/contact) +
2D Compatibility (PS) -20494 + (NN) -11856 + (LL) 3648
1D Compatibility (HY) -3600 + (ID) 1300
Total energy: -129028.0 ( -101.36 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1RKT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RKT-query.scw
PDB file :
Tito_Scwrl_1RKT.pdb
: