Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKNKTFLAAALVALAASFPVHAATDYTRTRYPIVLSHGLFGFKSV-GPVDYWHAIVPALEKDGAKVFATSQSPVNSNE---VRGEQLLAQVEEVLALTGAEKVNLIGHSQGGMTVRYVAGVAPQLVASVTTMGTPHKGTPVADAVTGFSEFLGPIGTEVIASAVEALFSVVDIVDGGEWVKGDALAALNSLNTPGTARFNQRFPQAIPAS----ACGQGAETVAGVRYYSMSGTGS------------------------LTNALDPSSAGLAVTGLLF----GEANDGLVGQCSSHLGSVVKDNYRMDHLDEVNQLLGLVSLFESDPTQVYRQHANRLRNVGL |
| 1HQD Chain:A ((1-320)) | -----------------------ADNYAATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPHRGSEFADFVQGVLAYDPTGLSSTVIAAFVNVFGILT--SSSNNTNQDALAALKTLTTAQAATYNQNYPSAGLGAPGSCQTGAPTETVGGNTHLLYSWAGTAIQPTISVFGVTGATDTSTIPLVDPANALDPSTLALFGTGTVMVNRGSGQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLKLAGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HQD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48075 for 2568 contacts (-18.7/contact) +
2D Compatibility (PS) -30273 + (NN) -10281 + (LL) 2684
1D Compatibility (HY) -19200 + (ID) 6450
Total energy: -111595.0 ( -43.46 by residue)
QMean score : 0.344
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