Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSLLFALLATLLLVGGARAETDPDYSMVLLTE-NFPPYNMAINGKNFAQ-EDNIDGIAVDIVREMFKRA-G--IKYSLTLRFPWDRIYKLALEKPGYGVFV-TARLAEREDKFKWVGPIGPDDWVLLAKGDSPITLGSLDEAKKYRIGAYKGDAIAEFLGK----NGFE-ADLAL-RDQENAQKLVKGQIDLWASGDPAGRYLAKQEGVTGLKTV-LRFNSDQLYLALNRETPDEVVQKLQAALDGMRKEGFVEDILNSYL
2V25 Chain:A ((33-258))
---------------------SIKSKGQLIVGVKNDVPHYALLD------QATGEIKGFEVDVAKLLAKSILGDDKKIKLVA-VNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK--YKSLADMKGANIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDK----SEILPDSFEPQSYGIVTKKDD-PAFAKYVDDFVKEHKN--EIDALAKKWG
General information:
TITO was launched using:
RESULT:
Template:
2V25.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111792 for 1713 contacts (-65.3/contact) +
2D Compatibility (PS) -22936 + (NN) -11523 + (LL) 2396
1D Compatibility (HY) -4000 + (ID) 1450
Total energy: -149305.0 ( -87.16 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2V25.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V25-query.scw
PDB file :
Tito_Scwrl_2V25.pdb
: