Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSALVGVIMGSKSDWSTLSHTADMLDKLGIPYEVKVVSAHRTPDLLFQYAEEAEGRGLEVIIAGAGGAAHLPGMCAAKTHLPVLGVPVQSSMLSGVDSLLSIVQMPAGVPVATLAIGKAGAVNAALLSASILGAKHPQYHEALKQFRANQTETVLDNPDPRDA
3LP6 Chain:A ((7-166))
-RPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGG--AGNAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQR
General information:
TITO was launched using:
RESULT:
Template:
3LP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129160 for 1309 contacts (-98.7/contact) +
2D Compatibility (PS) -16964 + (NN) -2652 + (LL) 180
1D Compatibility (HY) -15600 + (ID) 4500
Total energy: -168696.0 ( -128.87 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3LP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LP6-query.scw
PDB file :
Tito_Scwrl_3LP6.pdb
: