Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLLFSALLLLSGHTQASEWNDSQAVDKLFGAAGVKGTFVLYDVQRQRYVGHDRERAETRFVPASTYKVANSLIGLSTGAVRSADEVLPYGGKPQRFKAWEHDMSLRDAIKASNVPVYQELARRIGLERMRANVSRLGYGNAEIGQVVDNFWLVGPLKISAMEQTRFLLRLAQGELPFPAPVQSTVRAMTLLESGPGWELHGKTGWC---FDCTPELGWWVGWVKRNERLYGFALNIDMPGGEADIGKRVELGKASLKALGILP
1H8Y Chain:B ((1-222))
------------SSITENTSWN------KEFSAEAVNGVFVLCKSSSKSCATNNLARASKEYLPASTFKIPSAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLSLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLFLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKGTEVYFFAFNMDI-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1H8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106861 for 1759 contacts (-60.8/contact) +
2D Compatibility (PS) -23609 + (NN) -9269 + (LL) 2740
1D Compatibility (HY) -19200 + (ID) 4250
Total energy: -160449.0 ( -91.22 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1H8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H8Y-query.scw
PDB file :
Tito_Scwrl_1H8Y.pdb
: