Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTNNHYYTNDETIKHNRKTWQVMLKGFNMSFTSDNGVFSKNTVDFGSKLLIESFELETKIGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYDNVTANDYQAIISNPPIRAGK-KIVHAILEGAYDHLQETGELWIVIQKKQGGPSAEKKMEEVFGNVETVAKDKGYFIFKSVKN
2XVM Chain:A ((21-141))
----------------------------------------------HSEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANG--YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2XVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53900 for 912 contacts (-59.1/contact) +
2D Compatibility (PS) -12896 + (NN) -5518 + (LL) 3704
1D Compatibility (HY) -2400 + (ID) 1200
Total energy: -72210.0 ( -79.18 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2XVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XVM-query.scw
PDB file :
Tito_Scwrl_2XVM.pdb
: