Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHIRVAAIIRH-QNKILLHTTK---NENYWTLPGGAVE-NELTKEGLQREMREELGEEVTIRELKIIAENRFVYRGEEMDSIEFYYIVELYPNSALLELSTFTKIEQFGQNGETDYELNFKWFEIDKVSEIEILPKFLQTELTQLSSDRIKHIQ
1SJY Chain:A ((13-131))
--LRAAGVVLLNERGDILLVQEKGIEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPD---GVLILRHVWLAEPEP---G---QTLAPAF-------TDEIAEASFVSREDFAQLY----------------------
General information:
TITO was launched using:
RESULT:
Template:
1SJY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38099 for 761 contacts (-50.1/contact) +
2D Compatibility (PS) -11600 + (NN) 2715 + (LL) 2864
1D Compatibility (HY) -400 + (ID) 1200
Total energy: -45720.0 ( -60.08 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_1SJY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJY-query.scw
PDB file :
Tito_Scwrl_1SJY.pdb
: