Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDIKILALDLDGTLFTTDKKVSEENKVALKAAREKGIKVVITTGRPLKAIGNLLEDLELVSDEDYSITFNGGLVQQNTGKILAKTAMTRQEVEDIHEELYQVGLPTDILSEGTVYSIANKG---H-----HS-----QYHLANP-LLEFIEVDDLEQ--VPKDVVYNKIVSVIDATYLDQQIAKLPDRLKVDYEMFKSRDIILELMPKGVHKAVGLELLTKHLGLDSSQVMAMGDEANDLSMLEWAGLGVAMANGIPEAKAIAKATTICNNDESGVAEAIGKYILSEEN |
3DNP Chain:A ((6-276)) | ---KQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLK-L--DAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLH--EKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESLSDLLMDEPVSAPVIEVYTE-HDIQ-----HDITETITKAFP-AVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNAVPEIKRKADWVTR-SNDEQGVAYMMKEYFRMQQR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98448 for 2208 contacts (-44.6/contact) +
2D Compatibility (PS) -27342 + (NN) -8640 + (LL) 948
1D Compatibility (HY) -16000 + (ID) 3550
Total energy: -153032.0 ( -69.31 by residue)
QMean score : 0.533
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