Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMPDEALVYVVDDDQGMLESTVWLLESVGLKARPFTQGRDFLDACEGGRHACVLLDVRMPGMGGLNVQDELLARGIDLPVIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALDRHARRRRHHDLDAGLHERLDSLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAGLVDPLRLREGT
1DBW Chain:A ((3-118))
-----DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERA---------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97128 for 898 contacts (-108.2/contact) +
2D Compatibility (PS) -12702 + (NN) -6340 + (LL) 7992
1D Compatibility (HY) -10000 + (ID) 1950
Total energy: -120128.0 ( -133.77 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_1DBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBW-query.scw
PDB file :
Tito_Scwrl_1DBW.pdb
: