Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEETVDGRKCRSLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTFGADDVVCTRIYVRE
3PPT Chain:A ((1-130))
AADLAGKWILESSENFDDYMKAVGVGMVMRKMAN--AATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQ----KG-SPDSILSREVKDGKMHMILKVNDVVCTRIYKRV
General information:
TITO was launched using:
RESULT:
Template:
3PPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23572 for 950 contacts (-24.8/contact) +
2D Compatibility (PS) -14469 + (NN) -6719 + (LL) 736
1D Compatibility (HY) -9600 + (ID) 2750
Total energy: -56374.0 ( -59.34 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_3PPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PPT-query.scw
PDB file :
Tito_Scwrl_3PPT.pdb
: