Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
1GH4 Chain:A ((1-119))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAMKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLD-------
General information:
TITO was launched using:
RESULT:
Template:
1GH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58285 for 831 contacts (-70.1/contact) +
2D Compatibility (PS) -12901 + (NN) -9857 + (LL) 2636
1D Compatibility (HY) -16400 + (ID) 4700
Total energy: -99507.0 ( -119.74 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_1GH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH4-query.scw
PDB file :
Tito_Scwrl_1GH4.pdb
: