Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTT------SSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSREL---------------KEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHL---KLFVTRIMQ-DFESDTFFPEID-----LEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
3RG9 Chain:A ((23-240))
RPPLRPFSVVVASDEKGGIGDGGTIPWE-IPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPASNSCSVFFDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVPRN
General information:
TITO was launched using:
RESULT:
Template:
3RG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77387 for 1400 contacts (-55.3/contact) +
2D Compatibility (PS) -20427 + (NN) -8350 + (LL) -140
1D Compatibility (HY) -8800 + (ID) 2850
Total energy: -117954.0 ( -84.25 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3RG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RG9-query.scw
PDB file :
Tito_Scwrl_3RG9.pdb
: