Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSHHWGYSKSNGPENWHKEFPIANGDRQSPVDIDTGTAQHDPSLQPLLIC---YDKVASKSIVNNGHSFNVEFDDSQDFAVLKEGPLSGSYRLIQFHFHWGS-SDGQGSEHTVNKKKYAAELHLVHWNT-KYGDFGKAVQHPDGLAVLGIFLKIGPASQGLQKITEALHSIKTKGKRAAFANFDPCSLLPGNL-DYWTYPGSLTTPPLLECVTWIVLKEPITVSSEQMSHFRKLNFNS--EGEAEELMVDNWRPAQPLKNRKIKASFK |
1JD0 Chain:A ((3-262)) | ---KWTYFGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSD-----MHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQVQKFDERLVYTSFS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JD0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100446 for 2019 contacts (-49.8/contact) +
2D Compatibility (PS) -26668 + (NN) -11348 + (LL) 736
1D Compatibility (HY) -18400 + (ID) 4350
Total energy: -160476.0 ( -79.48 by residue)
QMean score : 0.519
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