Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFRGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRF-ADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP
3VE9 Chain:A ((1-204))
-----------MNRVILSLDSPIPEETLR---KLNGKVAGIKVGWPLLLNLGKEKVKELVGLVDGIKILDLKLADIDNTMILIVDELKDITN-SFIAHAFVGVEGSLASLSQR----VDLFLVLSMSHPG---WNDAFYPYLREVARRVNPKGFVAPATRPSMISRVKGDF-PDKLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQEEVL--
General information:
TITO was launched using:
RESULT:
Template:
3VE9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136258 for 1704 contacts (-80.0/contact) +
2D Compatibility (PS) -21830 + (NN) -5435 + (LL) 1416
1D Compatibility (HY) -13600 + (ID) 3400
Total energy: -179107.0 ( -105.11 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3VE9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VE9-query.scw
PDB file :
Tito_Scwrl_3VE9.pdb
: