Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMYSKLLTLTTLLLPTALALPSLVERACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
1LRA Chain:A ((1-104))
--------------------------ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYAWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
General information:
TITO was launched using:
RESULT:
Template:
1LRA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44196 for 765 contacts (-57.8/contact) +
2D Compatibility (PS) -11866 + (NN) -9588 + (LL) 2712
1D Compatibility (HY) -12400 + (ID) 5100
Total energy: -80438.0 ( -105.15 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_1LRA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LRA-query.scw
PDB file :
Tito_Scwrl_1LRA.pdb
: