Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNILKYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDRNPGGDTIIGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
1V3W Chain:A ((3-167))
--------IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSH--GYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKHIK
General information:
TITO was launched using:
RESULT:
Template:
1V3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153552 for 1442 contacts (-106.5/contact) +
2D Compatibility (PS) -18032 + (NN) -3547 + (LL) 440
1D Compatibility (HY) -13200 + (ID) 2600
Total energy: -190491.0 ( -132.10 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1V3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V3W-query.scw
PDB file :
Tito_Scwrl_1V3W.pdb
: