Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLPGNIEL--NSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERT---HETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRL-----PIHGEYTVAYEPIWAIGTGHVPSNNAIAEVIEVI---------QSYTSKKHVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
4Y8F Chain:A ((8-249))
---IIAGNWKMHYTIDEAVKLVEELKPLVKDAKCEVVVCPTFVCLDAVKKAVEGTNIKVGAQNMHFEEKGAFTGEIAPRMLEAMNIDYVIIGHSERREYFNETDETCNKKVKAAFAHNLTPILCCGETLEQRENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASLVAADFAQIVNY-----
General information:
TITO was launched using:
RESULT:
Template:
4Y8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158259 for 1838 contacts (-86.1/contact) +
2D Compatibility (PS) -23993 + (NN) -8841 + (LL) 912
1D Compatibility (HY) -16000 + (ID) 4200
Total energy: -210381.0 ( -114.46 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4Y8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y8F-query.scw
PDB file :
Tito_Scwrl_4Y8F.pdb
: