Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFD---ELHQQGLNSDIIDETYINNHLMTKDYP-DPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
3UGS Chain:A ((4-224))
---------------------MNELKHLAVVMDGNR----------------GVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL-------------DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRERTFG-----
General information:
TITO was launched using:
RESULT:
Template:
3UGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93046 for 1475 contacts (-63.1/contact) +
2D Compatibility (PS) -21791 + (NN) -10185 + (LL) 3548
1D Compatibility (HY) -20000 + (ID) 3600
Total energy: -145074.0 ( -98.36 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3UGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UGS-query.scw
PDB file :
Tito_Scwrl_3UGS.pdb
: