Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELDGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIK--DGKWIGYNTDGIGYVKGLHS--VYPDLENAYILILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNI-NQISLADAEKYLAEFDIVI-NTTPAGMAGN-NESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDADINSMKTAVLQQLKGE |
| 2GPT Chain:A ((237-498)) | --YGIIGKPVSHSKSPIVHNQAFKSVDFNGVY--VHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGL---------TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYER--ELAEAIG-ALSLTDLDNY--EDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEMFVRQAYEQFEIFT-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GPT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101117 for 2000 contacts (-50.6/contact) +
2D Compatibility (PS) -23922 + (NN) -342 + (LL) 2820
1D Compatibility (HY) -15600 + (ID) 4300
Total energy: -142461.0 ( -71.23 by residue)
QMean score : 0.434
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