Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVT-ILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
3NM5 Chain:B ((4-230))
-IGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
General information:
TITO was launched using:
RESULT:
Template:
3NM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129915 for 2018 contacts (-64.4/contact) +
2D Compatibility (PS) -24425 + (NN) -9790 + (LL) 68
1D Compatibility (HY) -18400 + (ID) 4050
Total energy: -186512.0 ( -92.42 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_3NM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NM5-query.scw
PDB file :
Tito_Scwrl_3NM5.pdb
: