Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIK-EYLIAVKGPLTTPIGG--GIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDN------------NRKSVTLVHKGNIMKFTEGSFKQWGYDLAL--SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASK-VVTYDFARLMDGAEEVSTSAFADELIKNLK |
| 3TY4 Chain:A ((9-364)) | ----------------RRIVLGLIPADGIGKEVVPAARRLMENLPAKH--K-LKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGAK-----GKPVDLVIVRENTECLYVKEERMVQNTP-------------------GKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYAS--------------------------------INVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVG--DNFVMSEPVHGSAPDIAGRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGK------SGTNEITDAVLANI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TY4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172752 for 2939 contacts (-58.8/contact) +
2D Compatibility (PS) -36642 + (NN) -6699 + (LL) 5944
1D Compatibility (HY) -18800 + (ID) 5150
Total energy: -234099.0 ( -79.65 by residue)
QMean score : 0.552
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