Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEVKTFYNGNTMPQIGLGTFRVENDENCMESVKYAIEQGYRSIDTAKVYGNEEQVGAGIRAGLESTGIAREDLFITSKLYFEDFGRENVAAAYEASLSRLGLKYLDLYLVHWPG------------------TNEAVMVDTWKGMEDLYKNNKAKNIGVSNFEPEHLEALLAQVSI--KPVINQVEYHPYLTQHKLKLYLAAQHIVMESWSPL----------MNAQILNDETIKDIAQELGKSPAQVVLRWNVQHGVVIIPKSVTPNRISENFQIFDFELSDEQMTRIDGLNQDKRIGPDPKTFEG |
1C9W Chain:A ((12-303)) | -----------MPIVGLGTWQSPPGQ-VKEAVKVAIDAGYRHIDCAYAYYNEHEVGEAIQEKIKEKAVRREDLFIVSKLWPTCFERKLLKEAFQKTLTDLKLDYLDLYLIHWPQGLQPGKELFPKDDQGNVLTSKITFLDAWEVMEELVDEGLVKALGVSNFNHFQIERILNKPGLKHKPVTNQVECHPYLTQEKLIEYCHSKGITVTAYSPLGSPNRPWAKPEDPSLLEDPKIKEIAAKHKKTSAQVLIRFHIQRNVVVIPKSVTPARIHENFQVFDFQLSDQEMATILGFNRNWRACLLPET--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1C9W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111331 for 2172 contacts (-51.3/contact) +
2D Compatibility (PS) -28086 + (NN) -11352 + (LL) 548
1D Compatibility (HY) -27600 + (ID) 6050
Total energy: -183871.0 ( -84.66 by residue)
QMean score : 0.426
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