Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSW-GAAKQLDTASHFVLIFARKN-VTS-RSPYVQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQDPPKNKTRQAYEDVIEWVGPKE
3QDL Chain:A ((6-209))
----QEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKKQIAAHSYFNEE-MIKSASALMVVCSLRPSELLP---------------------------------------MQRLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVLEE----RINKPKIACLIALGKRVAEA-SQKSRKSKVDAITW-----
General information:
TITO was launched using:
RESULT:
Template:
3QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57018 for 1211 contacts (-47.1/contact) +
2D Compatibility (PS) -18527 + (NN) -5763 + (LL) 3588
1D Compatibility (HY) -12800 + (ID) 2500
Total energy: -93020.0 ( -76.81 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QDL-query.scw
PDB file :
Tito_Scwrl_3QDL.pdb
: