Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MILTAMQDAIGRTPIFKFTRKDYPIPLKSAIYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKIT-STTTIIEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGMAKYLKERIPNIRLIGVEP-EGSILNGGEPGPHEIEGIGVEFIPPFFANLDIDRFET---ISDEEGFSYTRKLAKKNGLLVGSSSGAAFAAALKEVQRLPE--GSQVLTIFPDMADRYLSKGIYS |
| 3VC3 Chain:E ((33-328)) | ---------IGRTPLVYLNKVTEGCGAYVAV--KQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDI---LDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQ-LPENKGKLIVTVHPSFGERYLSSVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95787 for 2737 contacts (-35.0/contact) +
2D Compatibility (PS) -31883 + (NN) -15912 + (LL) 1712
1D Compatibility (HY) -19200 + (ID) 6100
Total energy: -167170.0 ( -61.08 by residue)
QMean score : 0.606
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