Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVRGIFEELGEDNFRMFEKNLIDELKTLKTPHIISTGGGIVMHENLKG----LGTTFYLKMDFETLIKRLNQKERE-KRPLLN-N--LTQAKELFEKRQALYEKNASFIIDARGG-LNNSLKQVLQFIA
3TRF Chain:A ((5-172))
LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCK-LDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQK-GEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIK
General information:
TITO was launched using:
RESULT:
Template:
3TRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82867 for 1185 contacts (-69.9/contact) +
2D Compatibility (PS) -17409 + (NN) -8826 + (LL) 280
1D Compatibility (HY) -8800 + (ID) 2700
Total energy: -120322.0 ( -101.54 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_3TRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRF-query.scw
PDB file :
Tito_Scwrl_3TRF.pdb
: