Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFEKWIGLTLLLSSLGYPCQKVSISFKQYENL-IHIHQKGCNNEVVCRTLISIALLESSLGLNNKREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLKTKLLNDVGFAIQLAKQILKENFDYY-HQKHPNKSVYQLVEMAIGAYNGGMKHNPNGAYMKKFRCIYSQVRYNE
3F1J Chain:A ((3-142))
SKHSYVELKDKVIVPGWP------------TLMLEIDFVGGTSR---NQFLNIPFLSVKEPLQLPREKKLTDY----FTIDVEP-----AGHSLVNIYFQIDDFLLLTLNSL-SVYKDPIRKYMFLRLNKEQSKHAINAAFNVFSYRLRNIGVGPLGPDIRSSGP------
General information:
TITO was launched using:
RESULT:
Template:
3F1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46861 for 927 contacts (-50.6/contact) +
2D Compatibility (PS) -13747 + (NN) 7144 + (LL) 2864
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -56900.0 ( -61.38 by residue)
QMean score : 0.147
(partial model without unconserved sides chains):
PDB file :
Tito_3F1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F1J-query.scw
PDB file :
Tito_Scwrl_3F1J.pdb
: