Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------------MDIKACYQNAQALLEGHFLLSSGFH---SNYYLQSAKVLEDPKLAEQLALELAKQIQEAHLNIECVCSPAIGGILAGYELARAL-------GVRFIFTERVDNTMTLRRGFEVKKNEKILVCEDIITTGKSAMECAKVLEE-KGAQIVAFGALANRGICKRAHSHLKAQEGACLPSH-----LPLFALEDFVFDMHKPSSCPLCATSVAIKPGSRGN
4FYM Chain:G ((9-260))
EFLCDEEIYKSFVHLKDKICEERKKKELVSYSSYIKEMKKLLKVVLLKYKALKFRKSNYFF-SSGVLNNIVSSNIICFLLSELILKNKLSFDYLLGASYKGIPMVSLTSHFLFESKKYSNIFYLYDRVIVGNLD-------DEKKNIIIIDDVFTCGTALTEILAKLKTYEHLKVVAFIVLLNRNEYEINENNQKIYFKDIFEKRVGIPLYSILSYKDDIQSMI---------------------
General information:
TITO was launched using:
RESULT:
Template:
4FYM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113298 for 1267 contacts (-89.4/contact) +
2D Compatibility (PS) -18623 + (NN) -5026 + (LL) 1048
1D Compatibility (HY) -16800 + (ID) 1500
Total energy: -154199.0 ( -121.70 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_4FYM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FYM-query.scw
PDB file :
Tito_Scwrl_4FYM.pdb
: