Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIKDAHFLTSSNNLSQCPASLTSEMVILGRSNVGKSTFINTLLGKNLAKSSATPGKTRLANFFSTTWEDKENALTTTFNVIDLPGFGYAKVSKSLKKEWEGFLWELLSVRVSIKLFIHLIDARHLDLEIDKNAKENIQALLRPDQAYLSLFTKFDKLNKNE-QHRLFLNAPKPFLINT-IHFNALSSKYPTLEIVRQTLLKYLLTNPL
1EGA Chain:A ((5-171))
--------------------KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT------EGAYQAIYVDTPGLHMEEKRA-INRLMN---KAASSSIGDVELVIFVVEGTRW-TPDDEMVL---NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQM--NFLDIVPISAETGLNV----DTIAAIVRKHLP
General information:
TITO was launched using:
RESULT:
Template:
1EGA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76549 for 1208 contacts (-63.4/contact) +
2D Compatibility (PS) -17867 + (NN) -5891 + (LL) 2824
1D Compatibility (HY) -5600 + (ID) 1500
Total energy: -104583.0 ( -86.58 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_1EGA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EGA-query.scw
PDB file :
Tito_Scwrl_1EGA.pdb
: