Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----LATGIGTAKMILCGEHAVVYGEPAISVPFTQAVVTTNVETS------------IKTKFSSAFFSGDLDDMPDFLAGIK---------------ALVVDVLNEIGNGECVSIHVVSGVPIGRGLGSSAAVATSIARGLYKYFNQ---------------ELDSKKLLAIVNAAEKIAHGNASGVDAITVVSEKPVWYERDRKLEIMHFPKKITFVVADTGVPSETRDAVKDVQVLYKENQVEIGKIIHQLGDISREIKTHLEG------DADTVKIGAAMNKAQSYLETLTVSDSSLEKLIKVARSNGADGAKLTGGGRGGCIIAVAKN---QEIAEQITKALHNAGAAQEWIFTIGEGSYESDSHRTHECGAN---- |
| 1KVK Chain:A ((1-394)) | MLSEVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPA-LQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGF-DCWETSIGAPGVSMHSATSIEDPVRQALG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142777 for 2621 contacts (-54.5/contact) +
2D Compatibility (PS) -34408 + (NN) -12085 + (LL) 132
1D Compatibility (HY) -16000 + (ID) 4250
Total energy: -209388.0 ( -79.89 by residue)
QMean score : 0.529
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