Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATYFVMRKAGS-NA------GHPP-A-EMFEL-WLVLIMTFLLLTSSFTCGLAIGEMRK-GNVKMLTIYSIITLILGAGFVGFELYEFAHYVTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN
1M56 Chain:C ((68-266))
----------EGDHTPVVRLGLRWGFILFIMSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHA---AFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIWGQ--
General information:
TITO was launched using:
RESULT:
Template:
1M56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183394 for 1343 contacts (-136.6/contact) +
2D Compatibility (PS) -19190 + (NN) -4681 + (LL) 1172
1D Compatibility (HY) -15200 + (ID) 2650
Total energy: -223943.0 ( -166.75 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_1M56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M56-query.scw
PDB file :
Tito_Scwrl_1M56.pdb
: