Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIQIVTVGKLKEKYLVQGIAEYLKRLSAY-AKVTIV-----EVPDEKAPEV-LSDAEMKQVKDKEGARILAKIPDDAYVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSNERISFGRLTLPHQL---MRLVLVEQVYRAFRIVRGEPYHK-
1MXI Chain:A ((1-156))
-MLDIVLY----EPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFALTTKGCPAHSQ---------VKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNL
General information:
TITO was launched using:
RESULT:
Template:
1MXI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73341 for 1041 contacts (-70.5/contact) +
2D Compatibility (PS) -16120 + (NN) -11155 + (LL) 1128
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -105188.0 ( -101.05 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1MXI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MXI-query.scw
PDB file :
Tito_Scwrl_1MXI.pdb
: