Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTDK---LILSDKDTKHPRLKDAENNFVWENK
1EP0 Chain:A ((4-184))
FRFIKTSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSV-RGVLRGLHFQRE-KPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPLEMVDDLIISEKDRNWKPLRENPVY------
General information:
TITO was launched using:
RESULT:
Template:
1EP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71220 for 1390 contacts (-51.2/contact) +
2D Compatibility (PS) -19110 + (NN) -6961 + (LL) 532
1D Compatibility (HY) -21200 + (ID) 4150
Total energy: -122109.0 ( -87.85 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_1EP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EP0-query.scw
PDB file :
Tito_Scwrl_1EP0.pdb
: