Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQT-KKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQI-PPSLQNIYLELHNDLNCEIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
4WPK Chain:A ((41-238))
-------------------------QFLRAEIAAGRRYLPAGSNVLRAFTFP-FDNVRVLIVGQDPYPTPGHAVGLSFSVAPDVRPWPRSLANIFDEYTADLGYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVAILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP--
General information:
TITO was launched using:
RESULT:
Template:
4WPK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89272 for 1581 contacts (-56.5/contact) +
2D Compatibility (PS) -21154 + (NN) -8216 + (LL) 1988
1D Compatibility (HY) -16800 + (ID) 4500
Total energy: -137954.0 ( -87.26 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_4WPK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WPK-query.scw
PDB file :
Tito_Scwrl_4WPK.pdb
: