Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVASDNLT--EGFFRQITEWQA-ANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDTDLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGVKNGS-EIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNN-----------SGTKIKNKVAIG
1GS5 Chain:A ((2-258))
-MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLD-EELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA-----
General information:
TITO was launched using:
RESULT:
Template:
1GS5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150363 for 2087 contacts (-72.0/contact) +
2D Compatibility (PS) -26793 + (NN) -9632 + (LL) 692
1D Compatibility (HY) -18800 + (ID) 4100
Total energy: -208996.0 ( -100.14 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1GS5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GS5-query.scw
PDB file :
Tito_Scwrl_1GS5.pdb
: