Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLRGILPFAHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVGINGHVLGFDIQQLAIDATNTR-LENAGVSSQVELVCASHARIPEYTSKPVRAAIFNLGYLPGGDKEITTTADSTLESIGHLMELLEVGGVIILVIYHGHPAG-------------KQEKDAVMTFCEAIPQQDFHVLSYNFINQKNDAPFVIIIEKRKPRQS
3L8D Chain:A ((44-201))
----------IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEG-----PDLSFIKGDLSSLPF-ENEQFEAIMAINSLEWTE---------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY-------------------
General information:
TITO was launched using:
RESULT:
Template:
3L8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101695 for 1109 contacts (-91.7/contact) +
2D Compatibility (PS) -15621 + (NN) -6395 + (LL) 2720
1D Compatibility (HY) -7600 + (ID) 1150
Total energy: -129741.0 ( -116.99 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_3L8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8D-query.scw
PDB file :
Tito_Scwrl_3L8D.pdb
: