Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKKVGLLVMAYGTPYKDEDIERYYTDI-------RHGHKPSEEMIADLRGRYHAIGGLSPLAKITEAQAYGLEKALNDSQDEVEFKAYIGLKHIEPFIEDAVEAMHKDGIEEAISIVLAPHYSSFSVEAYNKRAKEAADKLGGPRINAINDWYKQPKFIQMWADRINETAKQIPADELLDTVLIVSAHSLPEKIKQHNDPYPNQLQETADFIFEKVVVPHYALGWQSEGKTGEPWLGPDVQDLTRELYGREKYKHFIYTPVGFVAEHLEVLYDNDYECKVVTDEV--GAAYHRPPMPNSDPEFLEVLRTVVWEKYSN |
1DOZ Chain:A ((1-309)) | SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKPE-------PEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECK-VVTDDIGA-SYYRPEMPNAKPEFIDALATVVLKKLGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DOZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137473 for 2517 contacts (-54.6/contact) +
2D Compatibility (PS) -33049 + (NN) -18013 + (LL) 248
1D Compatibility (HY) -34000 + (ID) 9750
Total energy: -232037.0 ( -92.19 by residue)
QMean score : 0.566
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