Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGI-DFIKTREPGGSPISEKVRNIVLGI---GNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA
4TMK Chain:A ((2-200))
-RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG--ELDRIEQESFDFFNRTRARYLELAAQ-DKSIHTIDATQPLEAVMDAI---------
General information:
TITO was launched using:
RESULT:
Template:
4TMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41451 for 1532 contacts (-27.1/contact) +
2D Compatibility (PS) -21095 + (NN) -6435 + (LL) 1432
1D Compatibility (HY) -11600 + (ID) 3600
Total energy: -82749.0 ( -54.01 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_4TMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TMK-query.scw
PDB file :
Tito_Scwrl_4TMK.pdb
: