Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDM--DDFDLIQRTNVRGTFVVSKQA-ALRVRNG--GAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTG-KDDKTIDNLAKATPLERLGQPEDIAETVAFLAGP-ARWVNGQVIFTNGGLA
1GEE Chain:F ((8-250))
----KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLE--NPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM-
General information:
TITO was launched using:
RESULT:
Template:
1GEE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123398 for 2002 contacts (-61.6/contact) +
2D Compatibility (PS) -25950 + (NN) -13500 + (LL) 628
1D Compatibility (HY) -15200 + (ID) 4100
Total energy: -181520.0 ( -90.67 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1GEE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEE-query.scw
PDB file :
Tito_Scwrl_1GEE.pdb
: