Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDM--DDFDLIQRTNVRGTFVVSKQA-ALRVRNG--GAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTG-KDDKTIDNLAKATPLERLGQPEDIAETVAFLAGP-ARWVNGQVIFTNGGLA
1GEE Chain:F ((8-250))----KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLE--NPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM-


General information:
TITO was launched using:
RESULT:

Template: 1GEE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123398 for 2002 contacts (-61.6/contact) +
2D Compatibility (PS) -25950 + (NN) -13500 + (LL) 628
1D Compatibility (HY) -15200 + (ID) 4100
Total energy: -181520.0 ( -90.67 by residue)
QMean score : 0.508

(partial model without unconserved sides chains):
PDB file : Tito_1GEE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1GEE-query.scw
PDB file : Tito_Scwrl_1GEE.pdb: