Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTITQNRVKELRKQAGLSQQALADQIGVMRKTISHWELGNHRISTDNAKKLSQFFQVSIDDLLE
2R1J Chain:L ((3-66))
-TQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK
General information:
TITO was launched using:
RESULT:
Template:
2R1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24794 for 440 contacts (-56.4/contact) +
2D Compatibility (PS) -6824 + (NN) -502 + (LL) 208
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -35762.0 ( -81.28 by residue)
QMean score : 0.698
(partial model without unconserved sides chains):
PDB file :
Tito_2R1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R1J-query.scw
PDB file :
Tito_Scwrl_2R1J.pdb
: