Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRHE-HWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYLEKLNLGEVHYLKPVE
1CBK Chain:A ((1-160))
MITAYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENEQGRVRL-RRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVIVPLFEIASDLVLPNSQIITELVKQFADHKMIKLNP--
General information:
TITO was launched using:
RESULT:
Template:
1CBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131343 for 1236 contacts (-106.3/contact) +
2D Compatibility (PS) -16823 + (NN) -6378 + (LL) 400
1D Compatibility (HY) -15600 + (ID) 3200
Total energy: -172944.0 ( -139.92 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_1CBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CBK-query.scw
PDB file :
Tito_Scwrl_1CBK.pdb
: