Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MSKHQS----RCKPDSPKKLMELN----MTKKIFLFICATLLVGIALYTPTTSIFNHNNV----YAATKKAKIKFNKTQKKIVKKAREYAKSGHMSKDSIIEKLK-KDSKKYR---QEDINFVI--NNLKVDY----KKNALISAKIYSKTMNLSKQSIFEQLYSESPDKATHSDKFTKEESQYAIDHLKVDFKENALETAKSYQSSSSLSKEEIYKQLTSTLGDKFTNDEAQYAVDHLK-------- |
| 5CMN Chain:E ((3-260)) | LCPGLLKGVYQSEHLFESDHQSGAWCKDPLQASDKIYYMPWTPYRTDTLTEYSSKDDFIA---GRPTTTYKLPHRVDGTGFVVYDGALFFNKERTRNIVKFD---LRTRIKSGEAIIANANYHDTSPYRWGGKSDIDLAVDENGLWVIYATEQNNGKIVISQLNPYTLR------IEGTWDTAYDKRSASNAFMICGILYVVKSNKIDYIYN---TDQSKDSLVDVPFPNSYQYIAAVDYNP--RDNLLYVWNNYHVVKYSLDF |
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General information:
TITO was launched using:
| RESULT:
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Template: 5CMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 62618 for 1529 contacts (41.0/contact) +
2D Compatibility (PS) -20672 + (NN) 5468 + (LL) 1936
1D Compatibility (HY) -7600 + (ID) 2100
Total energy: 39650.0 ( 25.93 by residue)
QMean score : 0.066
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