Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNTVTPKETAGSFINKVLGGTATAIVVALIPNAILATFLKPFLSYGLAAEFLHIVQVFQFFTPIMAGFLIGQQFKFTPMQQLAVGGAAYIGSGAWAYTEVIQKGVATGSFQLRGIGDLINMMLTAALAVLAVKWFGNKFGSLTIILLPIIIGTGVGYLGWKLLPYVSYVTTLIGQGINSFTTLQPIAMSILIAMAFSMLIVSPISTVAIGLAIGLNGMSASAASMGVASTTAVLVWATMKANKSGVPIAIALGAMKMMMPNFLKHPVMAIPMLMTATVSSLTVPLFKLVGTPASSGFGLVGAVGPIASFEAGASMLIVILSWLVIPFAVGFVS------HKICKDILKLYKDDIFVFEGQN |
1LBE Chain:A ((1-250)) | ---IVPTRELENVFLGRCKDYEIT-----------RYLDILPRVRSDCSALWKDFFKAFSFKNPCDLDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLN----------SLVWCGQRANP-----------------------------GFNEKVCPDFKTCPVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKY--------------------------------------ELPNLT-NKVTRVKVIVLHRLGEKIIEKCG----AGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRL---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LBE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213334 for 1946 contacts (-109.6/contact) +
2D Compatibility (PS) -25056 + (NN) 2483 + (LL) 10696
1D Compatibility (HY) -4800 + (ID) 2000
Total energy: -232011.0 ( -119.22 by residue)
QMean score : 0.183
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