Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIAAMEEELKLLVENLEDKSQETVLS-NVYYSGRYGEHELVLVQSGVGKVMSAMSVAILVESFKVDAIINTGSAGAVATGLNVGDVVVADTLVYHDVDLTAFGYDYGQMSMQPLYFHSDKTFVSTFEAVLSKEEMTSKVGLIATGDSFIAGQEKIDVIKGHFPQVLAVEMEGAAIAQAAQATGKPFVVVRAMSDTAAHDANITFDEFIIEAGKRSAQVLMAFLKAL
4OJT Chain:A ((4-227))
-KIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFL----EKSAHTSAKFLKSM
General information:
TITO was launched using:
RESULT:
Template:
4OJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162738 for 1993 contacts (-81.7/contact) +
2D Compatibility (PS) -23844 + (NN) -6404 + (LL) 348
1D Compatibility (HY) -18000 + (ID) 3750
Total energy: -214388.0 ( -107.57 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_4OJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OJT-query.scw
PDB file :
Tito_Scwrl_4OJT.pdb
: