Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK---------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
3KO4 Chain:D ((1-157))
MRVVIQRVKGAILSVR---------LEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHDI
General information:
TITO was launched using:
RESULT:
Template:
3KO4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85502 for 940 contacts (-91.0/contact) +
2D Compatibility (PS) -14725 + (NN) -6782 + (LL) 404
1D Compatibility (HY) -14400 + (ID) 2750
Total energy: -123755.0 ( -131.65 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3KO4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KO4-query.scw
PDB file :
Tito_Scwrl_3KO4.pdb
: