Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRYTGPSWKQSRRLGLSLTGTGKE-------LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKAKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVTPGQVISVREKSMKVPAILEAVEATLGRPA--FVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML
2VQF Chain:D ((2-209))
-GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASK-KKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR--
General information:
TITO was launched using:
RESULT:
Template:
2VQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53426 for 1465 contacts (-36.5/contact) +
2D Compatibility (PS) -21975 + (NN) -14918 + (LL) 736
1D Compatibility (HY) -15200 + (ID) 5150
Total energy: -109933.0 ( -75.04 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2VQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQF-query.scw
PDB file :
Tito_Scwrl_2VQF.pdb
: